[GENERAL] db_adaptor = Bio::DB::SeqFeature::Store db_args = -adaptor memory -dir "/data/www/gbrowse/html//databases/elegans_core" plugins = Aligner RestrictionAnnotator # examples to show in the introduction examples = C01F4 # feature to show on startup initial landmark = C01F4 # "automatic" classes to try when an unqualified identifier is given automatic classes = gene mRNA EST_match ######################## # Default glyph settings ######################## [TRACK DEFAULTS] glyph = generic height = 10 bgcolor = lightgrey fgcolor = black font2color = blue label density = 25 bump density = 100 # where to link to when user clicks in detailed view link = AUTO ################## TRACK CONFIGURATION #################### # the remainder of the sections configure individual tracks ########################################################### [Genes] feature = gene glyph = gene height = 8 bgcolor = blue description = 1 key = Protein-coding genes [Alignments] feature = EST_match:BLAT_EST_BEST glyph = segments height = 7 draw_target = 1 show_mismatch = 1 bgcolor = sub { my $feature = shift; my $name = $feature->display_name; if ($name =~ /\.5$/) { return 'red'; } else { return 'orange'; } } canonical_strand = 1 group_pattern = /\.[53]$/ key = ESTs [DNA] glyph = dna global feature = 1 height = 40 do_gc = 1 gc_window = auto fgcolor = red axis_color = blue strand = both key = DNA/GC Content